PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_04547
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ERF
Protein Properties Length: 369aa    MW: 40110.4 Da    PI: 4.6605
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_04547genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-183281255
         AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                ++ GVr+++ +grWvAeI+d      ++ r++lg+f+tae+Aa+a+++a+  l+g
  PEQU_04547 32 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEDAARAYDEAACLLRG 81
                789******.7*********33....35**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.15E-313188No hitNo description
SuperFamilySSF541713.66E-193290IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-273288IPR001471AP2/ERF domain
SMARTSM003801.8E-343295IPR001471AP2/ERF domain
PROSITE profilePS5103219.3883289IPR001471AP2/ERF domain
PfamPF008476.8E-133281IPR001471AP2/ERF domain
PRINTSPR003679.3E-83344IPR001471AP2/ERF domain
PRINTSPR003679.3E-85571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
NPTMGSKRKT TSSEDPDKSS SPSTATHRAR KRFVGVRQRP SGRWVAEIKD TIQKIRVWLG  60
TFDTAEDAAR AYDEAACLLR GANTRTNFWP STTTHALPSR ITTLLLHRLK SRSPVSAIAD  120
ETQAQSHGLL TPAPFENHPQ PQPLVKEEEE EEESGNDEIP FEYFLNEPCD STDVVSGEVD  180
EEGEEKTGVD LNEMDFDQFG GSYYSPFEIA EGMGEDEWSG GDDGASMLGA AMRRMKYERK  240
ISASLYAFNG ISECLKLKLG GRMGGGGGGG GEAMSEQLYG LSKACKRQRV EEIAERLEVK  300
NEALENDYST ILHSSSNSSS SPSYSSYMKK PPAAAAAAAA AALNTEVELS IWSSLDLSPI  360
CVASNAVKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-133188462ATERF1
3gcc_A2e-133188462ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259267GGRMGGGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035804.13e-76PREDICTED: uncharacterized protein LOC105133481
TrEMBLB9IK184e-75B9IK18_POPTR; Uncharacterized protein
STRINGPOPTR_0017s12370.11e-74(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54823052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.17e-22related to AP2 11